| Publication | Type |
| Dean, J.C. (2000) Preliminary keys for the identification of Australian caddisfly larvae of the families Antipodoeciidae, Atriplectididae, Limnephilidae and Plectrotarsidae. CRCFE and MDBC Identification Guide No. 31. | Technical report |
| Dean, J.C. (1997) Larvae of the Australian Hydrobiosidae (Insecta : Trichoptera). CRCFE and MDBC Identification Guide No. 11. | Technical report |
| Dean, J.C. (1999) Preliminary keys for the identification of Australian mayfly nymphs of the family Leptophlebiidae. CRCFE and MDBC Identification Guide No. 20. | Technical report |
| Davis, J. (1998) A guide to the identification of late larval Psephenidae Water Pennies (Insecta- Coleoptera). CRCFE and MDBC Identification Guide No. 17. | Technical report |
| Dean, J.C., St Clair, R. and Cartwright, D.I. (2004) Identification keys to Australian families and genera of caddis-fly larvae (Trichoptera). CRCFE and MDBC Identification Guide No. 50. | Technical report |
| Dean, J.C. (1999) Preliminary keys for the identification of Australian Trichoptera larvae of the family Hydropsychidae. CRCFE and MDBC Identification Guide No. 22. | Technical report |
| Govedich, F.R. (2001) A reference guide to the ecology and taxonomy of freshwater and terrestrial leeches (Euhirudinea) of Australasia and Oceania. CRCFE and MDBC Identification Guide No. 35. | Technical report |
| Harper, M.; Burden, F.; Lawrence, I. (2000) Development of options for a quantitative lowland river model. Progress report ScA1 2000. | Technical report |
| Harvey, M.S.; Growns, J.E. (1998) A guide to the identification of late larval Psephenidae Water Pennies (Insecta- Coleoptera). CRCFE and MDBC Identification Guide No. 18. | Technical report |
| Hawking, J.H., Smith, F.J (1997) Colour guide to invertebrates of Australian Inland Waters. CRCFE and MDBC Identification Guide No. 8. | Technical report |
| Hawking, J.H. (2001) An introduction to the identification of aquatic caterpillars (Lepidoptera) found in Australian inland waters. CRCFE and MDBC Identification Guide No. 37. | Technical report |
| Hawking, J.H.; Theischinger, G. (1999) Dragonfly larvae (Odonata). A guide to the identification of larvae of Australian families and to the identification and ecology of larvae from New South Wales. CRCFE and MDBC Identification Guide No. 24. | Technical report |
| Glaister, A. (1999) Guide to the identification of Australian Elmidae larvae (Insecta- Coleoptera). CRCFE and MDBC Identification Guide No. 21. | Technical report |
| Hawking, J.H. (2000) A key to keys- A guide to keys and zoological information to identify invertebrates from Australian inland waters (2nd ed). CRCFE and MDBC Identification Guide No. 2. | Technical report |
| Horwitz, P. (1995) Preliminary key to the species of Decapoda (Crustacea - Malacostraca) found in Australian inland waters. CRCFE and MDBC Identification Guide No. 5. | Technical report |
| Horwitz, P.; Knott, B.; Williams, W.D. (1995) A preliminary key to the Malacostracan families (Crustacea) found in Australian inland waters. CRCFE and MDBC Identification Guide No. 4. | Technical report |
| Jensen, A.; Good, M.; Tucker, P.; Long, M. (2000) River Murray Barrages, Environmental Flows. An evaluation of environmental flow needs in the Lower Lakes and Coorong. Technical Report, June 2000. | Technical report |
| Hyne, R.V., Maher, W.A. (2000) Macroinvertebrate biomarkers- Links to toxicosis and changes in populations or communities. Final report, CRCFE, Canberra. | Technical report |
| Hyne, R.V., Maher, W.A. (2001) Macroinvertebrate biomarkers- Links to toxicosis and changes in populations or communities. Outcomes of a workshop held at Warragamba Conference Centre. | Technical report |
| Georges, A., Webster, I., Guarino, E., Thoms, M., Jolly, P., Doody, S. (2003) Modelling dry season flows and predicting the impact of water extraction on a flagship species. Executive summary report for the Northern Territory Department of Planning and the Environment, CRC for Freshwater Ecology and the Applied Ecology Research Group, University of Canberra , Canberra. | Technical report |
| Lansbury, I.; Lake, P. S. (2002) Tasmanian aquatic and semi-aquatic Hemipterans. CRCFE and MDBC Identification Guide No. 40. | Technical report |
| Oliver, R., Hart, B. and Olley, J. (2003) Darling river algal growth and cycling and sources of nutrients. Technical Report 2003. | Technical report |
| Lawrence, I.; Bormans, M.; Oliver, R.; Ransom, G.; Sherman, B.; Ford, P.; Wasson, B. (2000) Physical and nutrient factors controlling algal succession and biomass in Burrinjuck Reservoir.. Technical report January 2000, CRCFE, Canberra. | Technical report |
| New, T.R. (2004) Introduction to the systematics and biography of Australia Aquatic Neuroptera.. CRCFE and MDBC Identification Guide No. 49. | Technical report |
| McGregor, G.B.; Fabbro, L.D. (2001) A guide to the identification of Australian freshwater planktonic Chroococcales (Cyanoprokaryota/Cyanobacteria). CRCFE and MDBC Identification Guide No. 39. | Technical report |
| Pearson, M.; Hawking, J.H. (2001) A bibliography to some of the ecological and biological literature of Australian aquatic inland invertebrates. CRCFE and MDBC Identification Guide No. 36. | Technical report |
| Pinder, A.M.; Brinkhurst, A.O. (1994) A preliminary guide to the identification of the microdrile Oligochaetes of Australian freshwaters. CRCFE and MDBC Identification Guide No. 1. | Technical report |
| Suter, P.J. (1997) A preliminary guide to the identification of nymphs of Australian baetid mayflies (Insecta- Ephemeroptera) found in flowing waters. CRCFE and MDBC Identification Guide No. 14. | Technical report |
| Suter, P.J. (1999) Illustrated key to the Australian caenid nymphs (Ephemeroptera: Caenidae). CRCFE and MDBC Identification Guide No. 23. | Technical report |
| St Clair, R.M. (2000) Preliminary keys for the identification of Australian caddisfly larvae of the family Leptoceridae. CRCFE and MDBC Identification Guide No. 27. | Technical report |